Tibeuleu/FOC_Reduction
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Create analysis tool

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This commit is contained in:
Thibault Barnouin
2022-04-06 15:45:14 +02:00
parent c4311bbb4b
commit f6df92a1c2
15 changed files with 652 additions and 184 deletions
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src/FOC_reduction.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python
#!/usr/bin/python3
#-*- coding:utf-8 -*-
"""
Main script where are progressively added the steps for the FOC pipeline reduction.
@@ -19,12 +19,12 @@ import matplotlib.pyplot as plt
def main():
##### User inputs
## Input and output locations
# globals()['data_folder'] = "../data/NGC1068_x274020/"
# infiles = ['x274020at.c0f.fits','x274020bt.c0f.fits','x274020ct.c0f.fits',
# 'x274020dt.c0f.fits','x274020et.c0f.fits','x274020ft.c0f.fits',
# 'x274020gt.c0f.fits','x274020ht.c0f.fits','x274020it.c0f.fits']
# psf_file = 'NGC1068_f253m00.fits'
# globals()['plots_folder'] = "../plots/NGC1068_x274020/"
globals()['data_folder'] = "../data/NGC1068_x274020/"
infiles = ['x274020at.c0f.fits','x274020bt.c0f.fits','x274020ct.c0f.fits',
'x274020dt.c0f.fits','x274020et.c0f.fits','x274020ft.c0f.fits',
'x274020gt.c0f.fits','x274020ht.c0f.fits','x274020it.c0f.fits']
psf_file = 'NGC1068_f253m00.fits'
globals()['plots_folder'] = "../plots/NGC1068_x274020/"
# globals()['data_folder'] = "../data/NGC1068_x14w010/"
# infiles = ['x14w0101t_c0f.fits','x14w0102t_c0f.fits','x14w0103t_c0f.fits',
@@ -63,10 +63,10 @@ def main():
# 'x3995202r_c0f.fits','x3995206r_c0f.fits']
# globals()['plots_folder'] = "../plots/PG1630+377_x39510/"
globals()['data_folder'] = "../data/IC5063_x3nl030/"
infiles = ['x3nl0301r_c0f.fits','x3nl0302r_c0f.fits','x3nl0303r_c0f.fits']
psf_file = 'IC5063_f502m00.fits'
globals()['plots_folder'] = "../plots/IC5063_x3nl030/"
# globals()['data_folder'] = "../data/IC5063_x3nl030/"
# infiles = ['x3nl0301r_c0f.fits','x3nl0302r_c0f.fits','x3nl0303r_c0f.fits']
# psf_file = 'IC5063_f502m00.fits'
# globals()['plots_folder'] = "../plots/IC5063_x3nl030/"
# globals()['data_folder'] = "../data/MKN3_x3nl010/"
# infiles = ['x3nl0101r_c0f.fits','x3nl0102r_c0f.fits','x3nl0103r_c0f.fits']
@@ -104,14 +104,14 @@ def main():
rebin = True
if rebin:
pxsize = 0.10
px_scale = 'arcsec' #pixel, arcsec or full
px_scale = 'full' #pixel, arcsec or full
rebin_operation = 'sum' #sum or average
# Alignement
align_center = 'image' #If None will align image to image center
display_data = False
# Smoothing
smoothing_function = 'combine' #gaussian_after, gaussian or combine
smoothing_FWHM = 0.20 #If None, no smoothing is done
smoothing_FWHM = None #If None, no smoothing is done
smoothing_scale = 'arcsec' #pixel or arcsec
# Rotation
rotate_stokes = True #rotation to North convention can give erroneous results
@@ -119,8 +119,8 @@ def main():
# Final crop
crop = False #Crop to desired ROI
# Polarization map output
figname = 'IC5063_FOC' #target/intrument name
figtype = '_combine_FWHM020' #additionnal informations
figname = 'NGC1068_FOC' #target/intrument name
figtype = '_full' #additionnal informations
SNRp_cut = 10. #P measurments with SNR>3
SNRi_cut = 100. #I measurments with SNR>30, which implies an uncertainty in P of 4.7%.
step_vec = 1 #plot all vectors in the array. if step_vec = 2, then every other vector will be plotted