Tibeuleu/FOC_Reduction
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correction on princ_angle and redo plots for all

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Tibeuleu
2022-11-07 17:36:12 +01:00
parent 4035ca1455
commit a5d02fc0c0
450 changed files with 148 additions and 86 deletions
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src/FOC_reduction.py
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@@ -18,12 +18,12 @@ from astropy.wcs import WCS
##### User inputs
## Input and output locations
#globals()['data_folder'] = "../data/NGC1068_x274020/"
#globals()['infiles'] = ['x274020at_c0f.fits','x274020bt_c0f.fits','x274020ct_c0f.fits',
# 'x274020dt_c0f.fits','x274020et_c0f.fits','x274020ft_c0f.fits',
# 'x274020gt_c0f.fits','x274020ht_c0f.fits','x274020it_c0f.fits']
##psf_file = 'NGC1068_f253m00.fits'
#globals()['plots_folder'] = "../plots/NGC1068_x274020/"
globals()['data_folder'] = "../data/NGC1068_x274020/"
globals()['infiles'] = ['x274020at_c0f.fits','x274020bt_c0f.fits','x274020ct_c0f.fits',
'x274020dt_c0f.fits','x274020et_c0f.fits','x274020ft_c0f.fits',
'x274020gt_c0f.fits','x274020ht_c0f.fits','x274020it_c0f.fits']
#psf_file = 'NGC1068_f253m00.fits'
globals()['plots_folder'] = "../plots/NGC1068_x274020/"
#globals()['data_folder'] = "../data/IC5063_x3nl030/"
#globals()['infiles'] = ['x3nl0301r_c0f.fits','x3nl0302r_c0f.fits','x3nl0303r_c0f.fits']
@@ -35,14 +35,14 @@ from astropy.wcs import WCS
# 'x14w0104t_c0f.fits','x14w0105p_c0f.fits','x14w0106t_c0f.fits']
#globals()['plots_folder'] = "../plots/NGC1068_x14w010/"
globals()['data_folder'] = "../data/3C405_x136060/"
globals()['infiles'] = ['x1360601t_c0f.fits','x1360602t_c0f.fits','x1360603t_c0f.fits']
globals()['plots_folder'] = "../plots/3C405_x136060/"
#globals()['data_folder'] = "../data/3C405_x136060/"
#globals()['infiles'] = ['x1360601t_c0f.fits','x1360602t_c0f.fits','x1360603t_c0f.fits']
#globals()['plots_folder'] = "../plots/3C405_x136060/"
#globals()['data_folder'] = "../data/CygnusA_x43w0/"
#globals()['infiles'] = ['x43w0101r_c0f.fits', 'x43w0102r_c0f.fits', 'x43w0103r_c0f.fits',
# 'x43w0104r_c0f.fits', 'x43w0105r_c0f.fits', 'x43w0106r_c0f.fits',
# 'x43w0107r_c0f.fits', 'x43w0108r_c0f.fits', 'x43w0109r_c0f.fits']
##globals()['infiles'] = ['x43w0101r_c0f.fits', 'x43w0102r_c0f.fits', 'x43w0103r_c0f.fits',
## 'x43w0104r_c0f.fits', 'x43w0105r_c0f.fits', 'x43w0106r_c0f.fits',
## 'x43w0107r_c0f.fits', 'x43w0108r_c0f.fits', 'x43w0109r_c0f.fits']
#globals()['infiles'] = ['x43w0201r_c0f.fits', 'x43w0202r_c0f.fits', 'x43w0203r_c0f.fits',
# 'x43w0204r_c0f.fits', 'x43w0205r_c0f.fits', 'x43w0206r_c0f.fits']
#globals()['plots_folder'] = "../plots/CygnusA_x43w0/"
@@ -72,7 +72,7 @@ globals()['plots_folder'] = "../plots/3C405_x136060/"
#globals()['plots_folder'] = "../plots/MKN3_x3nl010/"
#globals()['data_folder'] = "../data/MKN3_x3md010/"
#globals()['infiles'] = ['x3md0101r_c0f.fits', 'x3md0102r_c0f.fits', 'x3md0103r_c0f.fits']
##globals()['infiles'] = ['x3md0101r_c0f.fits', 'x3md0102r_c0f.fits', 'x3md0103r_c0f.fits']
#globals()['infiles'] = ['x3md0104r_c0f.fits', 'x3md0105r_c0f.fits', 'x3md0106r_c0f.fits']
#globals()['plots_folder'] = "../plots/MKN3_x3md010/"
@@ -128,7 +128,7 @@ def main():
# Data binning
rebin = True
if rebin:
pxsize = 0.10
pxsize = 0.05
px_scale = 'arcsec' #pixel, arcsec or full
rebin_operation = 'sum' #sum or average
# Alignement
@@ -136,7 +136,7 @@ def main():
display_data = False
# Smoothing
smoothing_function = 'combine' #gaussian_after, weighted_gaussian_after, gaussian, weighted_gaussian or combine
smoothing_FWHM = 0.20 #If None, no smoothing is done
smoothing_FWHM = 0.10 #If None, no smoothing is done
smoothing_scale = 'arcsec' #pixel or arcsec
# Rotation
rotate_stokes = True #rotation to North convention can give erroneous results
@@ -145,8 +145,8 @@ def main():
crop = False #Crop to desired ROI
final_display = True
# Polarization map output
figname = '3C405_FOC' #target/intrument name
figtype = '_combine_FWHM020' #additionnal informations
figname = 'NGC1068_FOC' #target/intrument name
figtype = '_combine_FWHM010' #additionnal informations
SNRp_cut = 5. #P measurments with SNR>3
SNRi_cut = 50. #I measurments with SNR>30, which implies an uncertainty in P of 4.7%.
step_vec = 1 #plot all vectors in the array. if step_vec = 2, then every other vector will be plotted
@@ -227,6 +227,7 @@ def main():
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_I", plots_folder=plots_folder, display='Intensity')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_P_flux", plots_folder=plots_folder, display='Pol_Flux')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_P", plots_folder=plots_folder, display='Pol_deg')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_PA", plots_folder=plots_folder, display='Pol_ang')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_I_err", plots_folder=plots_folder, display='I_err')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_P_err", plots_folder=plots_folder, display='Pol_deg_err')
proj_plots.polarization_map(deepcopy(Stokes_test), data_mask, SNRp_cut=SNRp_cut, SNRi_cut=SNRi_cut, step_vec=step_vec, savename=figname+figtype+"_SNRi", plots_folder=plots_folder, display='SNRi')