Tibeuleu/FOC_Reduction
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modify shebang

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This commit is contained in:
Thibault Barnouin
2024-11-19 13:50:23 +01:00
parent f6d62bff73
commit 3f97202a03
11 changed files with 173 additions and 118 deletions
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2
package/src/Combine.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath

14
package/src/emission_center.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath
@@ -41,18 +41,20 @@ def main(infile, target=None, output_dir=None):
target = Stokes[0].header["TARGNAME"]
fig = figure(figsize=(8, 8.5), layout="constrained")
fig, ax = polarization_map(Stokes, P_cut=0.99, step_vec=1, scale_vec=3, display="i", fig=fig, width=0.33, linewidth=0.5)
fig, ax = polarization_map(Stokes, P_cut=0.99, step_vec=1, scale_vec=3, display="pf", fig=fig, width=0.33, linewidth=0.5)
ax.plot(*Stokescenter, marker="+", color="gray", label="Best confidence for center: {0}".format(Stokespos.to_string("hmsdms")))
ax.plot(*Stokescenter, marker="+", color="k", lw=3)
ax.plot(*Stokescenter, marker="+", color="gray", lw=1.5, label="Best confidence for center: {0}".format(Stokespos.to_string("hmsdms")))
ax.contour(Stokescentconf, [0.01], colors="k", linewidths=3)
confcentcont = ax.contour(Stokescentconf, [0.01], colors="gray")
confcont = ax.contour(Stokesconf, [0.9905], colors="r")
# confcont = ax.contour(Stokesconf, [0.9905], colors="r")
# snr3cont = ax.contour(Stokessnr, [3.0], colors="b", linestyles="dashed")
# snr4cont = ax.contour(Stokessnr, [4.0], colors="b")
handles, labels = ax.get_legend_handles_labels()
labels.append(r"Center $Conf_{99\%}$ contour")
handles.append(Rectangle((0, 0), 1, 1, fill=False, ec=confcentcont.get_edgecolor()[0]))
labels.append(r"Polarization $Conf_{99\%}$ contour")
handles.append(Rectangle((0, 0), 1, 1, fill=False, ec=confcont.get_edgecolor()[0]))
# labels.append(r"Polarization $Conf_{99\%}$ contour")
# handles.append(Rectangle((0, 0), 1, 1, fill=False, ec=confcont.get_edgecolor()[0]))
# labels.append(r"$SNR_P \geq$ 3 contour")
# handles.append(Rectangle((0, 0), 1, 1, fill=False, ls="--", ec=snr3cont.get_edgecolor()[0]))
# labels.append(r"$SNR_P \geq$ 4 contour")

4
package/src/get_cdelt.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath
@@ -18,7 +18,7 @@ def main(infiles=None):
from numpy.linalg import eig
if infiles is None:
print('Usage: "python get_cdelt.py -f infiles"')
print('Usage: "env python3 get_cdelt.py -f infiles"')
return 1
prod = [["/".join(filepath.split("/")[:-1]), filepath.split("/")[-1]] for filepath in infiles]
data_folder = prod[0][0]

2
package/src/overplot_IC5063.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python3
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath

13
package/src/overplot_MRK463E.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python3
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath
@@ -26,18 +26,21 @@ Radio = fits.open("./data/MRK463E/EMERLIN/Voorwerpjes_1356+1822_1356+1822_unifor
# B.plot(levels=levels, P_cut=0.99, SNRi_cut=1.0, scale_vec=5, norm=LogNorm(8.5e-18, 2.5e-15), savename="./plots/MRK463E/IR_overplot.pdf")
# B.write_to(path1="./data/MRK463E/FOC_data_WFPC.fits", path2="./data/MRK463E/WFPC_data.fits", suffix="aligned")
levels = np.array([0.8, 2, 5, 10, 20, 50]) / 100.0 * Stokes_UV[0].header["photflam"]
# levels = np.array([0.8, 2, 5, 10, 20, 50]) / 100.0 * Stokes_UV[0].header["photflam"]
levels = np.array([5, 10, 20, 50])
C = overplot_pol(Stokes_UV, Radio, norm=LogNorm())
C.other_im.set(norm=LogNorm(1e-4, 2e-2))
C.plot(
levels=levels,
P_cut=0.999,
SNRi_cut=5.0,
P_cut=0.99,
SNRi_cut=1.0,
step_vec=0,
scale_vec=3,
norm=LogNorm(1e-4, 2e-2),
cmap="inferno_r",
width=0.5,
linewidth=0.5,
savename="./plots/MRK463E/EMERLIN_overplot.pdf",
disptype="snri",
savename="./plots/MRK463E/EMERLIN_snri_overplot.pdf",
)
C.write_to(path1="./data/MRK463E/FOC_data_EMERLIN.fits", path2="./data/MRK463E/EMERLIN_data.fits", suffix="aligned")

2
package/src/overplot_NGC1068.py
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@@ -1,4 +1,4 @@
#!/usr/bin/python3
#!/usr/bin/env python3
# -*- coding:utf-8 -*-
from pathlib import Path
from sys import path as syspath