update templates

Thesis/Chapters/Chapter2.tex

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+\chapter{Chapter 2 title}
+\chaptermark{Chapter 2 title in header}
+\label{ch:chapter2}
+\graphicspath{{Figures/Ch2/}}
+\minitoc
+
+
+\section{This is a work in progress}
+
+\subsection{Don't look at my notes}
+
+\begin{notes}
+    This text is only visible with the "ShowNotes" class option
+\end{notes}